rstoolbox.components.DesignSeries.get_sequential_data¶

DesignSeries.get_sequential_data(query, seqID)¶

Provides data on the requested query.

Basically, this allows str access to the other getters.

Parameters:	query (str) – Query type: sequence, structure, structure_prediction. seqID (str) – Identifier of the sequence of interest.
Returns:	str or Series - depending on the input
Raises:	TypeError: if the data container is not DataFrame or Series. KeyError: If query has a non-accepted value.

See also

DesignFrame.get_sequence() DesignFrame.get_structure() DesignFrame.get_structure_prediction() DesignSeries.get_sequence() DesignSeries.get_structure() DesignSeries.get_structure_prediction()

Example

In [1]: from rstoolbox.io import parse_rosetta_file
   ...: import pandas as pd
   ...: pd.set_option('display.width', 1000)
   ...: pd.set_option('display.max_columns', 500)
   ...: df = parse_rosetta_file("../rstoolbox/tests/data/input_ssebig.minisilent.gz",
   ...:                         {'sequence': 'C', 'structure': 'C'})
   ...: df.get_sequential_data('sequence', 'C').iloc[:5]
   ...: df.get_sequential_data('structure', 'C').iloc[:5]
   ...: 
Out[1]: 
0    LEEEEEEELLLEEEEEEELLLLHHHHHHHHHHHHLLLLLLLLLLLEEEELLLEEEELL
1    LEEEEEEELLEEEEEEEELLLLHHHHHHHHHHHLLLLLLLLLLLEEEELLLLLEEEEL
2    LEEEEEEELLEEEEEEEELLLLHHHHHHHHHHHHLLLLLLLLLLEEEEELLLEEEEEL
3    LLLEEEEELLEEEEEELLLLLLHHHHHHHHHHHHLLLLLLLLLLEEEEELLLEEEEEL
4    LEEEEEEELLLEEEEEEELLLLHHHHHHHHHHHHLLLLLLLLLLLEEEELLLEEEELL
Name: structure_C, dtype: object