FragmentFrame.make_frequency_network(use_rmsd=False)¶Generate a graph with per-position frequency between residue types at each position.
Generate a DiGraph in which each node is a residue type and each
edge the frequency expected for the transition between residue-type in position i and
residue-type in position i+1.
| Parameters: | use_rmsd (bool) – When True, correct the pair counts by the RMSD. Basically,
the smaller the RMSD, the more the count weights. |
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| Returns: | DiGraph - with as many nodes as the 20 possible amino acids
by the length of the sequence. |
Warning
This is an experimental feature.