rstoolbox.components.SequenceFrame.get_reference_shift¶

SequenceFrame.get_reference_shift(seqID)¶

Get a reference_shift attached to a particular seqID.

If none was provided, it will return 1 as default.

Parameters:	seqID (str) – Identifier of the sequence of interest.
Raises:	TypeError: if the data container is not DataFrame or Series.

Example

In [1]: from rstoolbox.io import parse_rosetta_file
   ...: import pandas as pd
   ...: pd.set_option('display.width', 1000)
   ...: pd.set_option('display.max_columns', 500)
   ...: df = parse_rosetta_file("../rstoolbox/tests/data/input_ssebig.minisilent.gz",
   ...:                         {'sequence': 'C', 'structure': 'C'})
   ...: df.add_reference_structure('C', df.iloc[0].get_structure('C'))
   ...: df.add_reference_shift('C', 3)
   ...: df.get_reference_shift('C')
   ...: 
Out[1]: 3