rstoolbox.io.write_fragment_sequence_profiles¶

rstoolbox.io.write_fragment_sequence_profiles(df, filename=None, consensus=None)¶

Write a sequence profile from FragmentFrame to load into Rosetta’s SeqprofConsensus.

Format mimicks as much as possible BLAST PSSM.

Parameters:

df (Union[FragmentFrame, DataFrame]) – Fragments from which to create the matrix or the matrix itself.
filename (str) – Output file name.
consensus (str) – Consensus sequence to show.

Returns:

str - the expected file content if filename is None.

Raises:

IOError:	if `filename` exists and system.overwrite is `False`.
ValueError:	if `consensus` lenth differs from the expected by the given fragments.